yes the order is correct, but of course it’s not ok that the BankSticks are reformatted on every restart.
Two questions for my own understanding: is your MIDIbox running with MIOS V1.8? (it provides the important brown-out reset fix) - and how does your MIDIbox behave if only one BankStick is connected? At how many BankSticks do you notice the problem?
Are you able to write anything into a BankStick? If not, two or more connections of your BankStick board might be swapped.
What happens, if a single BankStick is connected -> directly <- to the core module (not using a special board, but maybe only a socket with some wires going to J4)
Thats really strange, I know that the schematic is correct (e.g. because Mike made a PCB based on this schematic, and it works fine). Concerning serial/parallel connections: the SDA and SCL pins have to be connected together, I guess that this is still the case on your module? You should be able to disconnect a wire in the chain in order to check, which one is causing the problem?