the firmware controls this particular LED in the following way:
(1) LFO6->Filter off: J5:D0=0V and J6:D1=0V (LED off because both pins are at the same level)
(2) LFO6->Filter on: J5:D0=5V and J6:D1=0V (LED on because of right direction -> anode connected to J5:D0)
But: all LED lines are time multiplexed. J6:D1 is only 0V for a short moment, in 6/7 of the multiplex cycle J6:D1 is held to 5V
This means: so long the LED line is not selected, we have:
(3) LFO6->Filter off: J5:D0=0V and J6:D1=5V (LED off because of wrong polarity)
(4) LFO6->Filter on: J5:D0=5V and J6:D1=5V (LED off because of same level at both pins)
If you connect the LED in the wrong direction (cathode connected to J5:D0), it will light in 6/7 of the update period because of case (3).
You can doublecheck this by turning on the modulation for LFO6->Filter in the MOD menu - the LED should turn off. If you’ve connected the LED in the right direction, it should turn on.